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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4769968_4770802_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4769968 - 4770802
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACGTCCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATAAGT
Flanking Amino Acid:
EISGYGRNEEFSPFYSEHLK
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.7
0.51
0.9
62.4
39.2
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
55
0.23
1.9
76.89
39.8

Associated Gene:

Gene:
PLAT
Ensembl Gene ID:
ENSAPLG00000006336
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006599
4768585 - 4776668
8084