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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4770944_4771030_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4770944 - 4771030
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TGTTAGTAAAGT
Flanking Amino Acid:
FDSENYDNDIALLQLKSDTK
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
87.4
0.84
0.6
85.2
22.1
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
43.5
-0.4
2.6
69.33
47.1

Associated Gene:

Gene:
PLAT
Ensembl Gene ID:
ENSAPLG00000006336
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006599
4768585 - 4776668
8084