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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4772845_4773089_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4772845 - 4773089
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGCA
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCTTTCTTATTT
Flanking Amino Acid:
EYCSVPSCSKVGNNNCKTGR
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.6
36.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.2
0.66
1
84
29.7
Minor 5ss
31.3
-2.1
3.4
41.7
44.9
Minor BPS
63.6
0.51
1.6
75.8
41.6

Associated Gene:

Gene:
PLAT
Ensembl Gene ID:
ENSAPLG00000006336
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006599
4768585 - 4776668
8084