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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4773182_4773779_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4773182 - 4773779
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATGCATTAACT
Flanking Amino Acid:
ELGLGNHNYCRNPDEDSRPW
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
32.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.8
0.69
0.9
77.7
36.3
Minor 5ss
24.1
-3
3.3
31
43.4
Minor BPS
71
0.74
1.7
86.69
38.7

Associated Gene:

Gene:
PLAT
Ensembl Gene ID:
ENSAPLG00000006336
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006599
4768585 - 4776668
8084