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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4774913_4775382_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4774913 - 4775382
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTAATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTTTCTCTAATT
Flanking Amino Acid:
MRYKRGARSRAICTDYSSGE
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80.1
0.68
0.9
73.5
34.7
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
68
0.64
1.7
84.17
37.2

Associated Gene:

Gene:
PLAT
Ensembl Gene ID:
ENSAPLG00000006336
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006599
4768585 - 4776668
8084