Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4784529_4786205_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4784529 - 4786205

Intron Length:

1677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTGTCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

GCATTCTTAAAA

Flanking Amino Acid:

EAILILLSDIASALRYLHEN

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

77.9

36.8

Major BPS

82.2

0.8

71.9

35.8

Major PPT

78.2

0.63

0.9

76.1

37.8

Minor 5ss

34.5

-1.8

3.3

46.4

44.2

Minor BPS

64.2

0.44

1.4

65.99

Associated Gene:

Gene:

IKBKB

Ensembl Gene ID:

ENSAPLG00000006379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023659

4782670 - 4793739

11070

ENSAPLT00000006682

4782670 - 4794258

11589