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Intron Name: Anas_platyrhynchos_platyrhynchos_23_4786870_4787100_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4786870 - 4787100

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TAAACTGCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTTAT

U12 Branch Point Sequence:

TTGTCTTATACT

Flanking Amino Acid:

TSFVGTLQYLAPELLEQQKY

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.3

40.1

Major BPS

73.7

0.59

1.2

65.7

43.2

Major PPT

62.8

0.29

58.6

42.4

Minor 5ss

31.8

-2.1

3.1

36.5

41.9

Minor BPS

57.5

0.32

79.44

Associated Gene:

Gene:

IKBKB

Ensembl Gene ID:

ENSAPLG00000006379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023659

4782670 - 4793739

11070

ENSAPLT00000006682

4782670 - 4794258

11589