Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4789040_4789404_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4789040 - 4789404

Intron Length:

365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTAAGGACT

5'SS Class:

major

3'SS Sequence:

CCTCTGTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACATAC

U12 Branch Point Sequence:

TTTCCCTTTTCT

Flanking Amino Acid:

RPHPESVDCILQDPKKILHF

Intron Amino Acid Position:

412

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.4

67.4

43.6

Major BPS

56.5

0.16

33.7

Major PPT

80.7

0.69

0.8

71.9

Minor 5ss

36.8

-1.5

3.3

54.7

42.4

Minor BPS

47.4

-0.1

3.6

86.01

39.8

Associated Gene:

Gene:

IKBKB

Ensembl Gene ID:

ENSAPLG00000006379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023659

4782670 - 4793739

11070

ENSAPLT00000006682

4782670 - 4794258

11589