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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4797223_4798080_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4797223 - 4798080
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTCTTACAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTGCTATTTACT
Flanking Amino Acid:
KAGDFQLHTNVNDGTEFGGS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
67.5
0.39
1
62.9
36.5
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
51.2
0.12
1.9
74.42
42

Associated Gene:

Gene:
VDAC3
Ensembl Gene ID:
ENSAPLG00000006503
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006778
4795766 - 4804771
9006