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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4798309_4799719_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4798309 - 4799719
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATAAAATTAAAT
Flanking Amino Acid:
ALDTVFVPNTGKKSGKLKTS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.6
0.82
0.7
81.5
30.6
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
48.5
-0
1.9
68.56
40.8

Associated Gene:

Gene:
VDAC3
Ensembl Gene ID:
ENSAPLG00000006503
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006778
4795766 - 4804771
9006