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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4801043_4802902_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4801043 - 4802902
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AGTGCTGAAACT
Flanking Amino Acid:
ELKTKSSSGVEFTATGSSNT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
72.3
0.5
1
68.6
37.2
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
45.3
-0.2
2.3
66.31
44.7

Associated Gene:

Gene:
VDAC3
Ensembl Gene ID:
ENSAPLG00000006503
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006778
4795766 - 4804771
9006