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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4802953_4803253_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4802953 - 4803253
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAT
U12 Branch Point Sequence:
TTCTCTGTACTC
Flanking Amino Acid:
SARDVFNKGYGFGMVKLELK
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
57.5
0.19
1
52.7
34.2
Major PPT
87.1
0.83
0.7
84.7
28.8
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
48.3
-0.1
2.2
65.01
41.9

Associated Gene:

Gene:
VDAC3
Ensembl Gene ID:
ENSAPLG00000006503
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006778
4795766 - 4804771
9006