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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4808769_4809366_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4808769 - 4809366
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTCTA
5'SS Class:
major
3'SS Sequence:
AATATGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GCATCTGTAATA
Flanking Amino Acid:
EYTIRPLGVTGVAGEALPVE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
70.7
41.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
71.1
0.48
1
62.8
43.2
Minor 5ss
33.4
-1.9
2.9
39
40.2
Minor BPS
50.2
0
2
60.25
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006545
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006803
4807030 - 4813994
6965