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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4812588_4812983_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4812588 - 4812983
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTACA
5'SS Class:
major
3'SS Sequence:
CTTACTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGCTTCTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
72.7
38.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
68.1
0.41
0.9
61.4
39.9
Minor 5ss
31
-2.2
2.7
35.2
40.7
Minor BPS
62.7
0.48
1.6
75.64
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006545
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006803
4807030 - 4813994
6965