About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_487931_504863_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
487931 - 504863
Intron Length:
16933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTGC
5'SS Class:
major
3'SS Sequence:
CTGTGTGATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GGTTCCCCAGCT
Flanking Amino Acid:
SVMRPQPGDKLQISSGRDCQ
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.36
1.3
55.9
44.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
63.7
0.31
1
58.3
42.3
Minor 5ss
41.6
-0.9
3.4
59.3
45.4
Minor BPS
48
-0
2.1
71.41
44.5

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046534
486826 - 602416
115591