Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_530275_548056_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

530275 - 548056

Intron Length:

17782

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTTCT

5'SS Class:

major

3'SS Sequence:

GATTCTCTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

CATTCTCTGATT

Flanking Amino Acid:

SSVIISSTHCSDGTILAIAL

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.1

74.4

36.7

Major BPS

0.72

38.9

Major PPT

79.5

0.66

0.9

41.1

Minor 5ss

44.8

-0.6

2.8

60.6

43.7

Minor BPS

55.8

0.26

1.7

72.17

39.3

Associated Gene:

Gene:

ANTXR1

Ensembl Gene ID:

ENSAPLG00000016232

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046534

486826 - 602416

115591

ENSAPLT00000016938

456530 - 602416

145887