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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_538039_548056_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
538039 - 548056
Intron Length:
10018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTCACCTCAAAG
Flanking Amino Acid:
SSVIISSTHCIQLSGDKRWL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.4
36.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
44.8
-0.6
2.8
60.6
43.7
Minor BPS
54.6
0.01
1.8
62.04
45.2

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044904
537410 - 602416
65007