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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_564458_567914_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
564458 - 567914
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCAATAATC
Flanking Amino Acid:
AAEPSSICAGESFQVVVRGN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.2
0.79
0.8
79.9
32.2
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
58.9
0.26
1.9
73.87
36.3

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044904
537410 - 602416
65007
ENSAPLT00000040948
542915 - 602416
59502
ENSAPLT00000016938
456530 - 602416
145887
ENSAPLT00000046534
486826 - 602416
115591
ENSAPLT00000045521
555078 - 602416
47339