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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_578886_581165_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
578886 - 581165
Intron Length:
2280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACG
5'SS Class:
strong_major
3'SS Sequence:
ACCATTCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATTTACTT
Flanking Amino Acid:
VGVKDFNETQLARIADSKDH
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71.4
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
67.1
0.39
1
65.5
40.4
Minor 5ss
33.1
-1.9
2.9
41.1
44.9
Minor BPS
64
0.52
1.8
84.41
36.8

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045521
555078 - 602416
47339
ENSAPLT00000044904
537410 - 602416
65007
ENSAPLT00000040948
542915 - 602416
59502
ENSAPLT00000016938
456530 - 602416
145887
ENSAPLT00000046534
486826 - 602416
115591