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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_582051_584112_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
582051 - 584112
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGAC
5'SS Class:
major
3'SS Sequence:
TTTGTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CGACTCAAAACA
Flanking Amino Acid:
SEQIYYENVHGYRTASVIIA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.3
31.4
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
74.8
0.56
1
73.5
41.9
Minor 5ss
25.4
-2.8
3.2
29.4
37.4
Minor BPS
43.9
-0.4
1.9
51.03
40

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045521
555078 - 602416
47339
ENSAPLT00000044904
537410 - 602416
65007
ENSAPLT00000040948
542915 - 602416
59502
ENSAPLT00000016938
456530 - 602416
145887
ENSAPLT00000046534
486826 - 602416
115591