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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_590200_590873_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
590200 - 590873
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
AATCACTTACTT
Flanking Amino Acid:
FVEHLARKFISPQLRMSFIV
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
88.2
0.86
0.7
80.8
31.2
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
52.2
0.15
1.8
70.37
40.3

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044904
537410 - 602416
65007
ENSAPLT00000040948
542915 - 602416
59502
ENSAPLT00000016938
456530 - 602416
145887
ENSAPLT00000046534
486826 - 602416
115591
ENSAPLT00000045521
555078 - 602416
47339