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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_590946_601266_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
590946 - 601266
Intron Length:
10321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTCATGTAATA
Flanking Amino Acid:
GGFDLYFILDKSGSVLHHWN
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
66.4
45.1
Major BPS
80
0.75
1
78.6
31
Major PPT
79.4
0.66
0.8
74.5
35.6
Minor 5ss
35.3
-1.7
2.9
41.6
38.9
Minor BPS
46.9
-0.2
2.1
61.1
39.6

Associated Gene:

Gene:
ANTXR1
Ensembl Gene ID:
ENSAPLG00000016232
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044904
537410 - 602416
65007
ENSAPLT00000040948
542915 - 602416
59502
ENSAPLT00000016938
456530 - 602416
145887
ENSAPLT00000046534
486826 - 602416
115591
ENSAPLT00000045521
555078 - 602416
47339