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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_60728_61205_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60728 - 61205
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TTTTCCCTATTG
Flanking Amino Acid:
FRLVGDNPKEEELLRKSFQD
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
78.3
0.64
0.8
73.8
29.6
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
59
0.14
2
72.09
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027582
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018764
60650 - 62978
2329