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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_61552_62075_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61552 - 62075
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GCGCTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CAGTCCTGGACA
Flanking Amino Acid:
QHNLYNGCTVVCTLTKEDNR
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.4
46
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
70.1
0.45
0.9
60.9
40.2
Minor 5ss
38.9
-1.2
2.8
45.7
43.7
Minor BPS
59.6
0.29
1.5
63.94
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027582
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018764
60650 - 62978
2329