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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_618964_620923_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
618964 - 620923
Intron Length:
1960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTATTTGATG
Flanking Amino Acid:
SIAVLAEESKNVKGERVVSR
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
69.7
0.44
1
67.2
43.4
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
57.8
0.1
1.6
62.7
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016229
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016929
617779 - 622513
4735