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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_621035_621254_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
621035 - 621254
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAAGTCTCAACC
Flanking Amino Acid:
SWKTVLNYDTGYIASRVVSE
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.9
0.85
0.8
84
29.9
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
56.1
0.17
1.7
64.47
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016229
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016929
617779 - 622513
4735