About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_621414_621783_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
621414 - 621783
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AAAATGTTAATT
Flanking Amino Acid:
LLLTPALAQFFQNVKGVKRQ
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.3
75.8
35.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
35.4
-1.7
2.8
42.9
38.5
Minor BPS
48.7
-0
2
64.84
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016229
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016929
617779 - 622513
4735