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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_626961_627564_R

Intron Information:

Intron Rank:
143611
Intron Class:
major
Intron Phase:
Intron Coordinates:
626961 - 627564
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.7
0.76
0.7
82.1
28.6
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024600
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025699
626434 - 630929
4496