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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_636874_637412_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
636874 - 637412
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTTTACCA
Flanking Amino Acid:
VFWTQTSALQTFVLNEPNND
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.2
0.54
1
76
31.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
65.7
0.49
1.6
75.16
36.6

Associated Gene:

Gene:
GKN2
Ensembl Gene ID:
ENSAPLG00000016225
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016925
636224 - 640105
3882