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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_660321_664134_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
660321 - 664134
Intron Length:
3814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAAAT
Flanking Amino Acid:
ANIIRSFKNEDPSSHPIGIT
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.4
0.73
0.9
73.9
40.7
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
62.6
0.47
1.8
80.39
41.7

Associated Gene:

Gene:
BMP10
Ensembl Gene ID:
ENSAPLG00000016219
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016921
659987 - 665078
5092