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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_679886_680456_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
679886 - 680456
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCATACTC
Flanking Amino Acid:
QKNEYVEQIKSLEKENYEVW
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
47.6
-0.2
1.9
57.87
41.9

Associated Gene:

Gene:
ARHGAP25
Ensembl Gene ID:
ENSAPLG00000016184
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016899
678128 - 699413
21286