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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_685013_687220_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
685013 - 687220
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
GTGGCTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTGATTTTGATG
Flanking Amino Acid:
FDAGERPSFDRDTDVHTVAS
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.5
0.42
1
60.9
40.3
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
48.9
-0.2
1.4
49.35
39.6

Associated Gene:

Gene:
ARHGAP25
Ensembl Gene ID:
ENSAPLG00000016184
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016899
678128 - 699413
21286