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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_691640_692029_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
691640 - 692029
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTGCCTATAAAT
Flanking Amino Acid:
GGKFIFEIIPGISGDLNRAG
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82.4
0.73
0.9
77
36.5
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
56.2
0.27
1.7
75.84
40.4

Associated Gene:

Gene:
ARHGAP25
Ensembl Gene ID:
ENSAPLG00000016184
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016899
678128 - 699413
21286