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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_70719_70885_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70719 - 70885
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACCCAC
5'SS Class:
major
3'SS Sequence:
CGCTTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCGCAC
U12 Branch Point Sequence:
GGGGCCGCACCG
Flanking Amino Acid:
ASAIRVVDISGGCGAMYEVH
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
54.5
44.8
Major BPS
42
-0.5
1.4
45
39.9
Major PPT
79.2
0.66
0.8
72.7
32.1
Minor 5ss
44.2
-0.6
3
60.2
44.5
Minor BPS
35.9
-1.2
2.3
36.67
45

Associated Gene:

Gene:
BOLA3
Ensembl Gene ID:
ENSAPLG00000018799
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017492
70325 - 71410
1086