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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_708428_708738_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
708428 - 708738
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGACTC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTCTCTGATGT
Flanking Amino Acid:
PLVLQSVVGWKTVRMYPFQI
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
60.8
44.4
Major BPS
79
0.72
1
69
38.9
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
34.7
-1.7
3.5
42.6
44.5
Minor BPS
45.9
-0.2
2
65.56
45

Associated Gene:

Gene:
CDS2
Ensembl Gene ID:
ENSAPLG00000016097
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016800
702553 - 727149
24597
ENSAPLT00000041653
702840 - 727149
24310
ENSAPLT00000039434
706045 - 715285
9241
ENSAPLT00000033050
705483 - 718511
13029
ENSAPLT00000020406
704622 - 727149
22528
ENSAPLT00000045477
706045 - 850736
144692