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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_708892_709617_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
708892 - 709617
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTCTCTTACTG
Flanking Amino Acid:
FFATVLFGLLLSYVMSGYRC
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
69.2
0.48
1
61
37.1
Major PPT
73.8
0.54
1
71.7
33.2
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
60.9
0.21
1.7
68.07
40.1

Associated Gene:

Gene:
CDS2
Ensembl Gene ID:
ENSAPLG00000016097
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016800
702553 - 727149
24597
ENSAPLT00000041653
702840 - 727149
24310
ENSAPLT00000039434
706045 - 715285
9241
ENSAPLT00000033050
705483 - 718511
13029
ENSAPLT00000020406
704622 - 727149
22528
ENSAPLT00000045477
706045 - 850736
144692