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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_70975_71344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70975 - 71344
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCGTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGTAT
U12 Branch Point Sequence:
TGGGACTTAGTA
Flanking Amino Acid:
MVQQHQMVNQALREEIKNMH
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
59.8
0.24
1.5
60.1
46.3
Major PPT
82.3
0.73
0.8
76.8
31.8
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
47.6
-0.1
1.8
56.89
42.7

Associated Gene:

Gene:
BOLA3
Ensembl Gene ID:
ENSAPLG00000018799
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017492
70325 - 71410
1086