Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_711455_712213_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

711455 - 712213

Intron Length:

759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATTA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAG

U12 Branch Point Sequence:

GCAGGCTGGACT

Flanking Amino Acid:

KKHYRLQFYMFGWTHVTLLI

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

0.9

79.6

29.4

Major BPS

59.9

0.25

1.6

59.6

46.8

Major PPT

88.5

0.87

0.7

80.8

31.2

Minor 5ss

41.7

-0.9

3.1

53.2

Minor BPS

44.3

-0.3

57.08

45.5

Associated Gene:

Gene:

CDS2

Ensembl Gene ID:

ENSAPLG00000016097

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039434

706045 - 715285

9241

ENSAPLT00000033050

705483 - 718511

13029

ENSAPLT00000020406

704622 - 727149

22528

ENSAPLT00000045477

706045 - 850736

144692

ENSAPLT00000016800

702553 - 727149

24597

ENSAPLT00000041653

702840 - 727149

24310