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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_713990_715003_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
713990 - 715003
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCCTC
5'SS Class:
weak_major
3'SS Sequence:
CTCTGTGGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTTTCTCTAACT
Flanking Amino Acid:
LNRALSNLSSRWKNWWVRGI
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
58
47.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
60.4
0.24
1
53
41.6
Minor 5ss
46.6
-0.3
3.2
67.7
43.5
Minor BPS
72.1
0.77
1.7
88.42
36.8

Associated Gene:

Gene:
CDS2
Ensembl Gene ID:
ENSAPLG00000016097
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033050
705483 - 718511
13029
ENSAPLT00000020406
704622 - 727149
22528
ENSAPLT00000045477
706045 - 850736
144692
ENSAPLT00000016800
702553 - 727149
24597
ENSAPLT00000041653
702840 - 727149
24310
ENSAPLT00000039434
706045 - 715285
9241