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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_715153_715234_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
715153 - 715234
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGCTCTTTATCT
Flanking Amino Acid:
SQEAQRSRLELQESESENKL
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.5
0.51
1
75.9
32.3
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
63.1
0.49
1.6
74.8
42.2

Associated Gene:

Gene:
CDS2
Ensembl Gene ID:
ENSAPLG00000016097
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039434
706045 - 715285
9241
ENSAPLT00000033050
705483 - 718511
13029