About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_715153_727086_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
715153 - 727086
Intron Length:
11934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGAGC
5'SS Class:
major
3'SS Sequence:
ATCTCTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGCTCTTTATCT
Flanking Amino Acid:
PGEAQEPEEKLQESESENKL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.6
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.5
0.51
1
75.9
32.3
Minor 5ss
33.3
-1.9
3.1
42.5
44.6
Minor BPS
63.1
0.49
1.6
74.8
42.2

Associated Gene:

Gene:
CDS2
Ensembl Gene ID:
ENSAPLG00000016097
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045477
706045 - 850736
144692
ENSAPLT00000041653
702840 - 727149
24310
ENSAPLT00000020406
704622 - 727149
22528
ENSAPLT00000016800
702553 - 727149
24597