Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_727825_728372_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

727825 - 728372

Intron Length:

548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCGGCA

5'SS Class:

major

3'SS Sequence:

TTTTTTTCCCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

AATCCCGTGAGC

Flanking Amino Acid:

RNIAMGVNLSSMSKILKCAG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.3

57.6

41.8

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

86.6

0.82

0.6

81.5

30.5

Minor 5ss

33.7

-1.9

3.7

47.4

48.2

Minor BPS

45.7

-0.3

2.2

58.41

40.5

Associated Gene:

Gene:

PCNA

Ensembl Gene ID:

ENSAPLG00000022945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019714

727170 - 730253

3084