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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_728471_728865_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
728471 - 728865
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTATTTGAAAC
Flanking Amino Acid:
DTLALVFEAPNQEKVSDYEM
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
82.5
0.73
0.7
81.3
30.8
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
55.9
0.16
1.5
68.96
36

Associated Gene:

Gene:
PCNA
Ensembl Gene ID:
ENSAPLG00000022945
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019714
727170 - 730253
3084