About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_729716_729829_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
729716 - 729829
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
TLSMSADVPLVVEYKIADMG
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.9
0.83
0.8
81.9
34.5
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
PCNA
Ensembl Gene ID:
ENSAPLG00000022945
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019714
727170 - 730253
3084