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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_72998_73100_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72998 - 73100
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGATTTTAAGA
Flanking Amino Acid:
SFKHFIFFVQVYNSIVMEHS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
1
75.3
33.4
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
51.6
0.05
1.7
59.83
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006445
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006678
72619 - 77117
4499