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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_74791_75627_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74791 - 75627
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACA
Flanking Amino Acid:
EDLNEWIAVNTVDFFNQINM
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.7
84.6
29.1
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
69.6
0.61
1.9
85.1
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006445
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020565
71678 - 77117
5440
ENSAPLT00000006678
72619 - 77117
4499