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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_77356_79182_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77356 - 79182
Intron Length:
1827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
TTTTCCACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTTTTTCCACT
Flanking Amino Acid:
CGRRLHLSAHRDDAVVISGR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
84.3
0.77
0.8
78.8
28.3
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
48.9
-0
1.9
69.47
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006539
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006815
77267 - 83752
6486