About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_778597_779148_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
778597 - 779148
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTGTTTTTAAG
Flanking Amino Acid:
SKHPTFFTLPVVINGGATSS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
70
0.5
1
67
39.8
Major PPT
78.4
0.64
1
82.6
32.8
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
48.1
-0.2
1.9
59.36
42.7

Associated Gene:

Gene:
SLC23A2
Ensembl Gene ID:
ENSAPLG00000015862
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016597
778465 - 802348
23884