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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_779248_785164_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
779248 - 785164
Intron Length:
5917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCAATTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTACCCCACCT
Flanking Amino Acid:
YTTENGIAEKSSLAETLDST
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
60.7
0.24
1
56.1
38.5
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
46.3
-0.2
2.2
69.83
46.5

Associated Gene:

Gene:
SLC23A2
Ensembl Gene ID:
ENSAPLG00000015862
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016597
778465 - 802348
23884