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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_792800_796884_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
792800 - 796884
Intron Length:
4085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGACAAAT
5'SS Class:
major
3'SS Sequence:
AATTCACCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
GCTTGTTGAATT
Flanking Amino Acid:
GNCRLCLLPFNMILEIRTAL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
70.5
35.2
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
60.6
0.24
1.1
58.7
36.7
Minor 5ss
37
-1.5
3.1
49.2
41.2
Minor BPS
50.9
0.11
1.9
68.97
42.6

Associated Gene:

Gene:
SLC23A2
Ensembl Gene ID:
ENSAPLG00000015862
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034978
781942 - 802348
20407